Skip to main content
  • Meeting abstract
  • Open access
  • Published:

1099 Fully automated segmentation of the left and right ventricles: validation with a large clinical trial


Segmentation of the left (LV) and right (RV) ventricles is required for clinical and research studies of cardiac function. Manual analysis by experts is time consuming and also susceptible to intra- and inter-observer variability. Automated segmentation of the LV and RV from SSFP images would remove these problems and allow powerful image segmentation algorithms to process the data prior to presentation to the clinician. Present segmentation techniques for cardiac MR images typically require user interaction or do not cater well for the RV.


To develop a mathematical model based method to automatically segment the LV and RV endocardium and epicardium in the middle short axis (SA) slice, and to validate the method in a large clinical trial.


A mathematical model of the LV, RV and myocardium at the mid-ventricular level was manually constructed from a randomly selected healthy volunteer. This was then automatically initialized and customized to the MR image data of each case. The method was applied to 330 high risk patients with vascular disease, enrolled in the ONTARGET Cardiac MRI substudy [1]. Studies were obtained at sites in six countries using a range of scanner manufacturers. Patient history included coronary artery disease (89%), hypertension (61%), myocardial infarction (58%), stroke (14%) and diabetes (34%). RV and LV contours were manually identified on all mid-ventricular slices to provide ground truth comparisons for validation. The fully automated segmentation methodology proceeded as follows: (1) The Fourier transform was calculated for each pixel through time and images representing the first harmonic (H1) at the frequency of the cardiac cycle were created for each of the short axis slices. The model was automatically located to its initial position based on the center and first eigenvector of the H1 volume [2]. (2) The middle SA slice was chosen and contours of the model endocardium and epicardium of the LV and RV obtained (Fig 1b). A new atlas-based registration framework was developed to integrate intensity, boundary and anatomical information into one system for contour refinement (Fig 1c).

Figure 1
figure 1

An example of middle SA slice fitting: (a) manual ground truth, (b) contour from initial model, (c) contour after atlas-based registration.


The method correctly identified the RV and myocardium in 327/330 cases, and correctly identified the LV in 328/330 cases. Figure 2 shows a quantitative comparison relative to the manually generated ground truth contours (Fig 1a) using the modified Hausdorff distances [3]. The results show the success of the localization of the initial position (mean +/- std: LV 4.68 +/- 2.42; RV 5.08 +/- 1.63; myocardium 5.07 +/- 1.82) and the improvement from the atlas-based registration step (mean +/- std: LV 1.17 +/- 0.58; RV 2.08 +/- 1.63; myocardium 2.21 +/- 1.35).

Figure 2
figure 2

Box plot of the modified Hausdorff distance between automatic and ground truth contours in pixel units: (a) LV, (b) RV, (c) myocardium.


An efficient fully-automated method for the segmentation of the LV and RV endocardium and epicardium in the middle SA slice is proposed and has been validated using a large clinical dataset. Application of the method to other slices will be investigated in the future.


  1. Anderson C: Rationale and Design of the Cardiac Magnetic Resonance Imaging Substudy of The ONTARGET Trial Programme. J Int Med Res. 2005, 33 (Suppl 1): 41A-48A.

    Google Scholar 

  2. Lin X, Cowan BR, Young AA: Automated detection of left ventricle in 4D MR images: experience from a large study. MICCAI. 2006, 728-735.

    Google Scholar 

  3. Dubuisson MP, Jain AK: A modified Hausdorff distance for object matching. Pattern Recognition. 1994, 1-

    Google Scholar 

Download references

Author information

Authors and Affiliations


Rights and permissions

Open Access This article is published under license to BioMed Central Ltd. This is an Open Access article is distributed under the terms of the Creative Commons Attribution 2.0 International License (, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Reprints and permissions

About this article

Cite this article

Lin, X., Cowan, B. & Young, A. 1099 Fully automated segmentation of the left and right ventricles: validation with a large clinical trial. J Cardiovasc Magn Reson 10 (Suppl 1), A224 (2008).

Download citation

  • Published:

  • DOI: