Skip to main content
  • Poster presentation
  • Open access
  • Published:

Detection and correction of regional shape bias arising from imaging protocol: differences between GRE and SSFP


We present a methodology to detect and correct shape bias arising from imaging protocol in an atlas of the left ventricle. We show how it can be used to correct the differences between GRE and SSFP shapes and volumes.


It is well established that different imaging protocols lead to different clinical parameters, for example gradient recalled echo (GRE) and steady state free precession (SSFP) protocols lead to different cardiac mass and volumes[1]. However, it is not known whether these differences are local or global in nature. Correction of local biases in heart shape is required for patient follow-up and meta-analyses of clinical trials which acquire data using different protocols.

For example, the Cardiac Atlas Project (CAP)[2]includes GRE images of asymptomatic volunteers from the MESA study[3]and patients with myocardial infarction imaged by SSFP from the DETERMINE study [4].By computing a shape mapping from one protocol to another, we can establish a bias-free comparison between these two populations.


Finite element shape models of the left ventricle (LV) were customized to 46 normal volunteers imaged by both GRE and SSFP and a multi-dimensional statistical transform was developed to correct the systematic bias between the protocols. Given that in our method there is no a priori guarantee that the mapping of local parameters will also obey the previously reported differences in terms of mass and volumes, errors were examined using both local shape and global volumetric measures.


There was a systematic local difference between GRE and SSFP around the apex and papillary muscles at ED, and also around the base at ES (Fig. 1) which is probably due to the flow induced variation in blood-myocardial contrast in GRE imaging. The bias was corrected locally and the mapping also provided a global correction for volume (Table 1). Further, cross-validation experiments showed that this methodology only required ~25 cases with both modalities to determine the transformation to robustly convert between scanning techniques.

Figure 1
figure 1

Shape bias between GRE and SSFP at ED (left) and ES (right); the arrow points from the centre toward the septum.

Table 1 Volume comparison of the original volumes between GRE and SSFP and the estimated ones from the leave-one-out experiments (L1). The error in volume is computed using the SSFP volume as reference.

This methodology can also be successfully applied to other types of bias, for instance, that of different analysts or, between data processed by different laboratories.


GRE and SSFP cardiac imaging protocols give rise to regional differences in LV geometry. We have established a generalisable framework which removes these biases and also corrects for mass and volumes.


NIH - National Heart, Lung and Blood Institute (Award Number R01HL087773).


  1. Malayeri AA et al: Journal of Magnetic Resonance Imaging. 2008, 28: 60-

    Google Scholar 

  2. Fonseca , Carissa G et al: Bioinformatics (Oxford Journals). 2011, doi: 10.1093/bioinformatics/btr360

    Google Scholar 

  3. Bild DE et al: American Journal of Epidemiology. 2002, 156: 871-

    Google Scholar 

  4. Kadish AH et al: Journal of Cardiovascular Electrophysiology. 2009, 20: 982-987.

    Google Scholar 

Download references

Author information

Authors and Affiliations


Rights and permissions

This article is published under license to BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Reprints and permissions

About this article

Cite this article

Medrano-Gracia, P., Bluemke, D.A., Cowan, B.R. et al. Detection and correction of regional shape bias arising from imaging protocol: differences between GRE and SSFP. J Cardiovasc Magn Reson 14 (Suppl 1), P270 (2012).

Download citation

  • Published:

  • DOI: