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Volume 18 Supplement 1

19th Annual SCMR Scientific Sessions

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Validation of a T1 and T2 mapping software for quantitative MRI


T1 quantification enables measurements of myocardial extracellular volume [1] and T2 mapping may be used for detection of edema in acute myocardial infarction [2]. The purpose of this study was to develop and validate a freely available software for relaxation time map generation.


The T1 & T2 mapping modules were implemented in Segment [3] and support the pulse sequence types shown in Table 1. T1 estimates were initialized by a lookup table search in an interval of 0-4000 ms and a 5 ms gap between entries. T2 estimates were initialized by linear regression to the signal logarithm. Relaxation time estimates were refined using a C-implementation of the Nelder-Mead Simplex method. Twelve Gadolinium-Agarose phantoms were used for validation at a 1.5T and a 3T MR-scanner (Siemens, Erlangen). Reference T1 values were determined using an Inversion Recovery (IR) Spin Echo sequence with TR = 10 seconds. Reference T2 values were determined using a Spin Echo sequence with TR = 10 seconds. Nelder-Mead Simplex optimization available in Matlab (Math Works, Natick, MA; 2013a) was used for reference relaxation time values.

Table 1

The proposed modules generated relaxation time maps from two free-breathing, single-shot bSSFP sequences. Saturation-Recovery (SR) and T2-preparation prepulses were used to create T1 & T2 weighting. Apart from T2-prepared images, a saturation prepared image was used in the T2 estimates, as previously proposed [4]. In addition, T1 was estimated with MOLLI at 1.5T using 5(3b)3 and 4(1b)3(1b)2 schemes. Acquisition times for the three bSSFP sequences were 13 min 15 sec for T1-SR, 11 sec for T1-MOLLI and 14 min 3 sec for the T2 sequence. Bias and Variability were determined using modified Bland-Altman analysis. Error percentages were computed by dividing the difference between the evaluated method and the reference with the reference value.


T1 and T2 reference values ranged from 214-1690 ms and 46-190 ms, respectively. Figure 1 shows the phantom validation results at 1.5T. Bias and variability (limits of agreement) at 1.5T were -0.32 ± 1.31% for SR-bSSFP and -4.96 ± 5.53% for MOLLI. MOLLI data with errors>6% originated from phantoms with reference T2 values<60 ms. Bias and variability at 3T were -2.15 ± 2.66% (SR-bSSFP). T2 bias and variability were 1.95 ± 4.06% at 1.5T and 0.37 ± 5.06% at 3T.

Figure 1
figure 1

The left panel shows modified Bland-Altman analysis of the phantom validation and the right panel shows corresponding T1 & T2 estimation examples from two phantoms. Left panel: Crosses indicate data-points, the solid lines indicate bias and the dotted lines correspond to bias +- 1.96 SD (Standard Deviation). Right panel: Solid lines represent estimated relaxation curves and blue circles indicate data-points.


A T1 & T2 mapping software was developed and evaluated. Low bias and variability was found for the T1-SR sequence. The increased variability of MOLLI compared to the SR sequence may be explained by the reduced number of sampling points used in MOLLI and an increasing T1 error for low T2 values. The increased variability of the T2-prepared sequence may be explained by limited SNR.


  1. Arheden , et al: Radiology. 1999, 211-

    Google Scholar 

  2. Ugander , et al: JACC CVI. 2012, 5-

    Google Scholar 

  3. Heiberg , et al: BMC Med Im. 2010, 10-

    Google Scholar 

  4. Akçakaya , et al: Magn Reson Med. 2015, 74-

    Google Scholar 

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Bidhult, S., Kantasis, G., Aletras, A.H. et al. Validation of a T1 and T2 mapping software for quantitative MRI. J Cardiovasc Magn Reson 18 (Suppl 1), W28 (2016).

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