- Open Access
A new automatic algorithm for quantification of myocardial infarction imaged by late gadolinium enhancement cardiovascular magnetic resonance: experimental validation and comparison to expert delineations in multi-center, multi-vendor patient data
- Henrik Engblom†1,
- Jane Tufvesson†1, 2,
- Robert Jablonowski1,
- Marcus Carlsson1,
- Anthony H. Aletras1, 3,
- Pavel Hoffmann4,
- Alexis Jacquier5, 6,
- Frank Kober5,
- Bernhard Metzler7,
- David Erlinge8,
- Dan Atar9,
- Håkan Arheden1 and
- Einar Heiberg1, 2, 10Email author
© Engblom et al. 2016
- Received: 1 December 2015
- Accepted: 20 April 2016
- Published: 4 May 2016
Late gadolinium enhancement (LGE) cardiovascular magnetic resonance (CMR) using magnitude inversion recovery (IR) or phase sensitive inversion recovery (PSIR) has become clinical standard for assessment of myocardial infarction (MI). However, there is no clinical standard for quantification of MI even though multiple methods have been proposed. Simple thresholds have yielded varying results and advanced algorithms have only been validated in single center studies. Therefore, the aim of this study was to develop an automatic algorithm for MI quantification in IR and PSIR LGE images and to validate the new algorithm experimentally and compare it to expert delineations in multi-center, multi-vendor patient data.
The new automatic algorithm, EWA (Expectation Maximization, weighted intensity, a priori information), was implemented using an intensity threshold by Expectation Maximization (EM) and a weighted summation to account for partial volume effects.
The EWA algorithm was validated in-vivo against triphenyltetrazolium-chloride (TTC) staining (n = 7 pigs with paired IR and PSIR images) and against ex-vivo high resolution T1-weighted images (n = 23 IR and n = 13 PSIR images). The EWA algorithm was also compared to expert delineation in 124 patients from multi-center, multi-vendor clinical trials 2–6 days following first time ST-elevation myocardial infarction (STEMI) treated with percutaneous coronary intervention (PCI) (n = 124 IR and n = 49 PSIR images).
Infarct size by the EWA algorithm in vivo in pigs showed a bias to ex-vivo TTC of −1 ± 4%LVM (R = 0.84) in IR and −2 ± 3%LVM (R = 0.92) in PSIR images and a bias to ex-vivo T1-weighted images of 0 ± 4%LVM (R = 0.94) in IR and 0 ± 5%LVM (R = 0.79) in PSIR images. In multi-center patient studies, infarct size by the EWA algorithm showed a bias to expert delineation of −2 ± 6 %LVM (R = 0.81) in IR images (n = 124) and 0 ± 5%LVM (R = 0.89) in PSIR images (n = 49).
The EWA algorithm was validated experimentally and in patient data with a low bias in both IR and PSIR LGE images. Thus, the use of EM and a weighted intensity as in the EWA algorithm, may serve as a clinical standard for the quantification of myocardial infarction in LGE CMR images.
- LGE CMR
- Automatic quantification algorithm
- Expectation maximization
- Experimental validation
- Multi-center patient data
Late gadolinium enhancement (LGE) cardiovascular magnetic resonance (CMR) is considered the reference standard for the assessment of myocardial infarction (MI) [1, 2]. Visualization of MI by use of gadolinium enhancement has evolved from T1-weighted imaging in 1984  to current use of LGE magnitude inversion recovery (IR)  and phase sensitive inversion recovery (PSIR) sequences  as clinical standard .
However, there is no clinical standard for quantification of MI in LGE images even though multiple methods have been proposed . Manual delineation or visual grading of MI is often used clinically but has the disadvantage of being subjective, and therefore threshold techniques have been proposed based on different numbers of standard deviations (SD) from remote myocardium or based on the full width half maximum (FWHM) intensity threshold [7–9]. These different approaches yield highly variable results . Recently Stirrat et al.  showed a difference between infarct size derived from IR and PSIR LGE images for threshold methods of SD from remote and FWHM. More advanced methods for MI quantification have been implemented and validated as the FACT algorithm by Hsu et al. [12, 13] and the weighted algorithm by Heiberg et al. . Both algorithms involve regional analysis of the infarcted myocardium to include microvascular obstruction (MVO) and exclude artifacts. However, the FACT algorithm  was developed and validated for PSIR images with surface coil intensity correction and based on a FWHM threshold, whereas the weighted algorithm  was developed and validated for magnitude IR images. Heiberg et al.  used a weighted approach to account for partial volume effects, which was shown to decrease variability compared to the use of pure signal intensity thresholds. The algorithm was, however, based on a SD threshold from remote, and the weighted approach was not applied in ex-vivo high resolution T1-weighted images. Using a threshold by Expectation Maximization (EM)  has been shown superior to FWHM and SD from remote for quantification of myocardium at risk in T2-weighted images , and the EM-algorithm has also been implemented for MI quantification in LGE images . The EM-algorithm has previously not been combined with a weighted approach and, to the best of our knowledge, no algorithms have been developed for MI quantification in both IR and PSIR LGE images and applied in multi-center, multi-vendor patient studies.
Therefore, the aim of this study was 1) to develop a new automatic algorithm for MI quantification by combining intensity threshold by Expectation Maximization (EM) with a weighted approach to account for partial volume effects, 2) to validate the automatic algorithm experimentally for IR and PSIR LGE images against ex-vivo TTC stained slices and ex-vivo high resolution T1-weighted images, and 3) compare the automatic algorithm in multi-center, multi-vendor patient data to consensus expert delineations as reference as well as compare the applicability of the new automatic algorithm to previously suggested methods for infarct quantification in both IR and PSIR LGE images.
Pigs with induced myocardial infarction were included from three previous studies, one mechanistic study of myocardial infarction (n = 15) , one cardioprotection study (n = 15)  and controls from one cardioprotection study previously used for validating the original weighted algorithm for infarct quantification (n = 8) . All three animal studies conformed to the Guide for the Care and Use of Laboratory Animals United States National Institutes of Health (NIH Publication No.85-23, revised 1996) and were approved by the Regional Ethics Committee. The experimental protocols for each of the studies have been previously published [14, 18, 19]. In short, all pigs were subjected to 40 min occlusion with a balloon placed after the first or the second diagonal branch of the left anterior descending artery (LAD). Myocardial infarction was imaged after four hours [14, 19], six hours  or seven days  of reperfusion with either in-vivo 3D IR LGE (n = 23), in-vivo 2D PSIR LGE (n = 13) and/or ex-vivo high resolution (0.5 × 0.5 × 0.5 mm) T1-weighted images (n = 38). CMR imaging was performed on a 1.5 T Philips scanner (Philips Healthcare, Best, The Netherlands). In-vivo LGE images were acquired approximately 20 min after injection of gadolinium-based contrast agent (typical resolution 1.5 × 1.5 × 8.0 mm, no slice gap). Ex-vivo high resolution (0.5 × 0.5 × 0.5 mm) T1-weighted images were acquired covering the entire left ventricle (LV) with the explanted hearts placed in plastic containers and the ventricles filled with balloons containing deuterated water. For ex-vivo imaging, a gadolinium-based contrast agent was administered 15 min prior to administration of a potassium chloride bolus. Seven pigs with MI were imaged, both in-vivo and ex-vivo, after seven days of reperfusion and following ex-vivo imaging, hearts were sliced into five mm slices and incubated in triphenyltetrazolium-chloride (TTC) for five minutes. The slices were subsequently photographed on both apical and basal sides for infarct analysis.
All images were analyzed using the software Segment (http://segment.heiberg.se) . For all analysis (clinical and experimental) endocardial and epicardial borders were traced manually with exclusion of the papillary muscles. Infarct size was expressed as % of left ventricular mass (LVM).
In LGE images, infarct expert delineation was performed using the weighted method previously validated and published for IR imaging , with manual checking to correct for obvious artifacts and failure of the computer algorithm to correctly identify infarction due to i.e. high noise levels. Hypointense regions within the region of gadolinium enhancement were considered to be MVO  and were included in the analysis as 100 % infarction. Delineation of each data set was performed by one of three primary observers (HE, MC and HA with 14, 15 and 20 years of experience, respectively) in a core lab setting (Imacor AB, Lund Sweden) with a quality control of the delineations by a second observer for each case. Different opinions for the delineations were resolved in consensus between all three observers when necessary. In a subset of 17 patients a second-observer delineation was performed using the same endocardial and epicardial borders to evaluate inter-observer variability of the expert delineation (MC vs. HE).
For the experimental in-vivo data, LGE images were delineated with the same method as for the patients by one observer (RJ with 5 years of CMR experience). In the high resolution T1-weighted images, infarct delineation was performed using a threshold of 8SD from remote , with manual corrections where needed (RJ or HE). Hypointense regions were considered to be MVO and included in the infarct delineation. Infarct quantification in the TTC images was performed manually by one observer, delineating the non TTC-stained parts of the myocardium as infarction (RJ).
Automatic quantification of MI
Surface coil intensity correction
Classification of myocardial intensities by means of an EM-algorithm
Segmentation of infarct region by means of a level set method
Inclusion of microvascular obstruction
Post processing to exclude artifacts
Calculation of the infarct size by weighting the pixels based on their intensity.
In step 1, surface coil intensity correction was applied as a second order linear correction to be able to account for intensity gradient proportional to the squared coil distance and was based on the intensities in the blood pool and remote myocardium. The remote myocardium was defined by using the maximal extent model of the culprit artery .
In step 2, an EM-algorithm  was used to classify myocardial pixel intensities as representative of normal myocardium or infarct. A constrained EM-algorithm iteratively refined an initial classification to find the maximum likelihood estimate of the mean and standard deviation for the Gaussian intensity distributions of normal myocardium and MI. The initial classification was defined as a small MI of 10 % by a pure threshold at the 90th percentile of the intensity histogram. The constraint was set to force pixel intensities below the 5th percentile classified as normal myocardium and pixel intensities above the 95th percentile classified as MI. The constraint was set in order to increase the stability of the EM-algorithm and ensure separation between the two estimated Gaussian distributions representative of normal myocardium and MI. The optimal intensity threshold was defined from the mean and standard deviation estimated by the EM-algorithm as the intensity for which there was an equal probability of being representative of normal myocardium and MI.
In step 3, the MI region was segmented using a fast level set method  in which the main driving force was what pixels to include or exclude based on intensity with parameters for smoothing as previously implemented by Heiberg et al.  for quantification of infarction. The seed points for this level set algorithm were all pixels above the calculated threshold in step 2. The main driving force in a level set method is called the speed image and should be defined to be positive for pixels to include and negative for pixels to exclude in the segmentation. Therefore, the speed image was set to a linear function with zero at the optimal threshold defined by EM, 1 at the maximal myocardial intensity and subsequently negative values for intensities below the optimal threshold.
In step 4, MVO was detected by means of a flood fill algorithm and morphological operations. Microvascular obstruction is characterized by regions of low intensity within the MI and might not have been detected as MI by thresholding. In the EWA algorithm MVO was detected slice by slice as holes in the infarct region by using a flood fill algorithm as suggested by Heiberg et al.  in combination with morphological closing as suggested by Hsu et al. . First a flood fill algorithm was used to detect dark pixels as MVO if totally surrounded by pixels segmented as infarct or connected to the endocardial border. Next a morphological closing operation was performed by first applying a dilation operation with a 3-by-3 pixel cross shaped kernel to close small gaps in the infarct segmentation. Then, the flood fill algorithm was reapplied to find any holes arising from the morphological closing before performing the erosion operation.
In step 5, post processing of the MI segmentation was performed in two steps: removing pixels classified as MI outside the culprit region and removing small isolated regions classified as MI. By using the same maximal extent model as for surface coil correction, bright regions outside the culprit artery region could be removed from the MI segmentation. Regions segmented as MI which were smaller than 1.5 cm3 were removed regardless of location if not comprising more than 1 % of the left ventricular mass or if being the only region of MI.
In step 6, the final step, the MI size was calculated by a weighted summation, where each pixel within the MI was weighed according to its intensity to account for partial volume effects. The weight represented the amount of infarcted cells within the pixel and hence in normal myocardium the weight should be 0 and in pixels with the maximal intensity the weight should be set to 1. The weight for each pixel was calculated as a linear function from weight 0 at the mean intensity of the remote myocardium to weight 1 at the 90th percentile of the intensities within the MI.
The maximal extent model of the culprit artery was needed for the intensity correction in step 1 and the first part of the post processing in step 5. However, the maximal extent model could not be applied in experimental studies where the anatomy differs and therefore the algorithm was used without the use of maximal extent model and user input of insertion points and culprit artery in the experimental part of this study.
Experimental validation: Infarct size by the EWA algorithm and infarct size by the expert delineation in in-vivo IR, in-vivo PSIR and ex-vivo high resolution T1-weighted images was compared to infarct size by TTC for myocardial infarction imaged seven days after reperfusion. Infarct size by the EWA algorithm in in-vivo IR, in-vivo PSIR and ex-vivo high resolution T1-weighted images was compared to infarct size by expert delineation in ex-vivo high resolution T1-weighted images regardless of timing of imaging. Comparisons were performed using Bland-Altman bias (mean ± standard deviation) and linear regression analysis (correlation coefficient).
Applicability in patient data: Infarct size by the EWA algorithm was compared to infarct size by expert delineation using Bland-Altman bias (mean ± standard deviation) and linear regression analysis (correlation coefficient). Performance of the EWA algorithm was compared to the original weighted algorithm by Heiberg et al. , and the thresholds of EM, 2, 3 and 5SD from remote, FWHM from minimum intensity as implemented by Amado et al. , FWHM from remote intensity as implemented by Hsu et al.  and Otsu's threshold . Comparison was performed in paired IR and PSIR LGE images using bias and linear regression analysis with expert delineation as reference. Regional agreement with expert delineation was evaluated using Dice Similarity Coefficient (DSC)  for both the full extent of the infarct and the core of the MI as represented if no weighting had been used.
Bias and regional agreement in paired IR and PSIR LGE images from multi-center patient studies
Magnitude IR LGE
Phase sensitive IR LGE
PSIR vs IR
Bias to expert delineation [%LVM]
DSC full extent
DSC core extent
Bias to expert delineation [%LVM]
DSC full extent
DSC core extent
0 ± 5
0.82 ± 0.14
0.81 ± 0.15
−1 ± 5
0.82 ± 0.17
0.79 ± 0.15
−1 ± 4
Original weighted algorithm
−7 ± 8
0.70 ± 0.32
0.67 ± 0.32
6 ± 7
0.67 ± 0.14
6 ± 8
0.68 ± 0.14
0 ± 6
7 ± 7
0.69 ± 0.15
8 ± 6
0.70 ± 0.13
1 ± 5
0 ± 7
0.70 ± 0.21
−2 ± 7
0.70 ± 0.19
−2 ± 4
−8 ± 8
0.50 ± 0.33
−13 ± 10
0.36 ± 0.31
−4 ± 6
FWHM (min) threshold
−8 ± 9
0.58 ± 0.20
9 ± 12
0.69 ± 0.17
18 ± 12
FWHM (remote) threshold
−8 ± 7
0.66 ± 0.19
−8 ± 11
0.50 ± 0.32
10 ± 15
0.64 ± 0.20
18 ± 17
This study has presented a new automatic algorithm, the EWA algorithm, for MI quantification based on intensity classification by Expectation Maximization (EM) and weighting each pixel according to its intensity to account for partial volume effects. The EWA algorithm was validated experimentally and compared to expert delineations in multi-center, multi-vendor patient data with a low bias and high regional agreement in both IR and PSIR LGE images. The performance of the EWA algorithm was found superior to several previously described methods for MI quantification and the EWA algorithm was successfully applied to high resolution T1-weighted images, showing the ability of the EWA algorithm to adapt to different image qualities. The superiority of the EWA algorithm compared to other methods such as Otsu and FWHM can be contributed to the combination of the constrained Expectation Maximization for threshold determination and the weighting of the pixels in the infarct quantification.
The EWA algorithm was validated against TTC with bias similar to FWHM from minimum intensity as suggested by Amado et al.  (4.1 ± 1.1 %LVM, R = 0.94) and the FACT algorithm by Hsu et al.  (1.9 % LVM, R = 0.96). The EWA algorithm was also validated against ex-vivo high resolution T1-weighted images in a larger cohort with bias comparable to the original weighted algorithm by Heiberg et al.  (−0.3 ± 1.3 %LVM). LGE in CMR has been shown to overestimate acute MI in comparison to TTC [18, 28, 29] and Jablonowski et al.  showed an overestimation by CMR after 6 h of reperfusion which was not seen after seven days of reperfusion. The overestimation in the acute setting was explained by an increased extracellular volume adjacent to the infarct which was not seen after seven days of reperfusion . Thus, in the current study TTC was used as reference in myocardial infarction imaged seven days after reperfusion but ex-vivo high resolution T1-weighted images were used as reference for quantification of acute MI. Ex-vivo high resolution T1-weighted images and inversion recovery LGE are based on the same principle of being proportional to the distribution of the gadolinium based contrast agent in the extracellular volume. Ex-vivo imaging enables high resolution imaging and therefore ex vivo high resolution T1-weighted imaging can be used as reference for in-vivo IR and PSIR LGE in both the acute and chronic setting.
However, neither TTC nor ex-vivo high resolution T1-weighted images can be used for validation in patient studies. In this study, expert delineation was chosen as the reference for MI quantification in patients, performed by using the original weighted algorithm by Heiberg et al.  followed by manual corrections and consensus reading. The expert delineation was validated against TTC demonstrating a lower bias (−1 ± 1 %LVM) compared to manual delineation in the study by Amado et al.  and Hsu et al.  (8.6 ± 1.9 % LVM, R = 0.69 and 5.4 %, R = 0.96, respectively). Interobserver variability was analyzed in patients in a core lab setting and showed a lower bias and variability compared with previous studies by Flett et al.  and McAlindon et al. . Thus, the expert delineation was used as reference in the patient population.
The EWA algorithm was applied in 124 patients from multi-center, multi-vendor studies with bias to expert delineation (−2 ± 6 %LVM) similar to the FACT algorithm by Hsu et al.  which was evaluated in 20 patients from a single center (3.8 %LVM, R = 0.95). Heiberg et al.  found a lower bias for the original weighted algorithm (0.3 ± 2.7 %LVM) in a two-vendor, single-center study of 40 patients. However, in the present study, the performance of the EWA algorithm was compared to the original weighted algorithm  and a higher bias and variability was found for the original weighted algorithm in the current multi-center, multi-vendor study than in the original study . Similarly, variability was increased for the threshold by FWHM from minimum intensity and n-SD from remote in comparison to the validation against TTC by Amado et al.  and in contrast to the study by Hsu et al.  an underestimation was seen for the threshold of FWHM from remote. The changes in bias and variability seen in the current multi-center, multi-vendor patient study compared to previous validations in experimental studies [8, 12, 14] and single-center patient studies [13, 14] underlines the importance of using multi-center, multi-vendor patient data. Multi-center, multi-vendor patient data has a larger variability in image quality and thus the automatic algorithm is faced with a larger challenge which may not have been accounted for in the algorithm if designed and validated for single-center patient data or experimental data.
Additionally, infarct validation needs to be performed in both magnitude IR and PSIR images since both are used in clinical routine. Stirrat et al.  recently showed a significant bias of infarct size in paired magnitude IR and PSIR images for n-SD from remote and FWHM from minimum intensity. Based on their findings we compared infarct size in paired IR and PSIR images to expert delineation in 49 patients for the EWA algorithm, threshold methods of EM, 2, 3, and 5 SD, FWHM from minimum intensity and Otsu's threshold. There was a large bias between IR and PSIR images for the threshold of FWHM from minimum intensity and Otsu's threshold with underestimation in IR and overestimation in PSIR images whereas the bias for the EWA method was 1 ± 4 %LVM. Bias between IR and PSIR for 2, 3 and 5 SD was lower in this study than in the study by Stirrat et al.  (−3 %LVM, −4 %LVM and −5 %LVM, respectively) and is possibly explained by different definitions of remote region. In the present study the remote region was defined from the a priori maximal extent model for each culprit artery. In the study by Stirrat et al.  care was taken to manually define a large remote region, however, infarct size in controls without myocardial infarction was found as 14 %LVM by 2SD and 9 %LVM by 3SD instead of the theoretically defined 2 % and 0.1 %. The difficulty in defining a remote region representative of normal myocardium is also shown by high variability of 2SD in inter- and intra observer variability and test-retest repeatability found by both Flett et al.  and McAlindon et al. . By using the EWA algorithm there is no need for manual definition of remote regions, and the EWA algorithm showed a lower variability and higher regional agreement than any other of the methods and a low bias and variability between IR and PSIR images.
The EWA algorithm was developed for quantification of myocardial infarction in both IR and PSIR LGE images and an intensity threshold was fitted using an EM algorithm. The EM algorithm was however implemented using two Gaussian distributions as opposed to the study by Hennemuth et al.  in which a Rayleigh-Gaussian mixture model was used. In the case where the myocardium is not properly nulled the distribution shifts from Rayleigh distribution to a more Gaussian distribution. This shift can also be caused by surface coil corrections applied at the scanner and the usage of both IR and PSIR images. In the current study the intensity histograms of the myocardial intensities were frequently perceived as being more representative of Gaussian distributions than of Rayleigh distributions and therefore the more generic approach of two Gaussian distributions was chosen.
The manual segmentation to which the EWA algorithm was tested in the patient data was initiated by a previously described computer algorithm  which may have a significant bias on the manual observer. That is why we in the present study include independent reference standard validation from the experimental data. That is also why we are describing the patient data as performance data, and not as validation, since there is no true reference standard for the patient data.
The EWA algorithm was applied in multi-center, multi-vendor patient data from clinical trials of first time STEMI and experimental studies of a single infarction and the EWA algorithm was developed for single vessel myocardial infarction. For multi-vessel myocardial infarction or multiple infarctions over time, the algorithm can, however, be used without the a priori information of culprit artery models. The algorithm would then not be able to apply the intensity correction and would need further validation for multi-vessel disease. For other types of myocardial fibrosis such as in the situation of hypertrophic cardiomyopathy and myocarditis both a priori information and post processing might need to be adjusted and would require additional validation for these groups of patients. However, the EWA algorithm was applied in the experimental data without the use of a priori information on culprit artery due to differences in anatomy and showed a low bias in IR and PSIR LGE images and ex-vivo high resolution T1-weighted images. The low bias found in T1-weighted images as well as in IR and PSIR LGE images shows the ability of the EWA algorithm to assess infarct size in a wide range of settings with a variety of different imaging strategies. The need for manual corrections was not assessed, however, considering the lower bias and higher regional agreement than for the original weighted algorithm less manual corrections would probably be needed. Especially for quantification in ex-vivo high resolution T1-weighted images, time will be saved by the limited amount of user input in comparison to definition of remote regions in all 0.5 mm slices covering the left ventricle.
We have developed a new automatic algorithm, the EWA algorithm, for quantification of myocardial infarction in LGE images based on combining an intensity classification by Expectation Maximization (EM) with a pixel intensity weighting approach to account for partial volume effects. The EWA algorithm performed well for both magnitude IR and PSIR LGE images when validated in experimental studies against TTC and ex-vivo high resolution T1-weighted images, and when compared to expert delineations in multi-center, multi-vendor patient data. Thus, using EM and a weighted approach as with the EWA algorithm, may serve as a candidate for a clinical standard in quantifying myocardial infarction.
This study has been funded by the Swedish Research Council (2011-3916, 2012-4944), The Swedish Heart and Lung Foundation, Swedish Medical Society, The Medical Faculty of Lund University, Sweden, and Region of Scania, Sweden. Funding for the CHILL-MI trial was received from Philips Healthcare. Funding for the MITOCARE trial was received from the European Commission within the 7th Framework Programme for RTD – Project MITOCARE – Grant Agreement HEALTH-2010-261034.
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